Module:Autotaxobox
--[[************************************************************************* This module provides support to the automated taxobox system – the templates Automatic taxobox, Speciesbox, Subspeciesbox, Infraspeciesbox, etc.
In particular it provides a way of traversing the taxonomic hierarchy encoded in taxonomy templates (templates with names of the form "Template:Taxonomy/TAXON_NAME") without causing template expansion depth errors.
- ]]
require('Module:No globals') local TaxonItalics = require('Module:TaxonItalics') -- use a function from Module:TaxonItalics to italicize a taxon name local TableRow = '|-\n' local TableEnd = '|}\n' local p = {} -- functions made public local l = {} -- internal functions, kept separate local colour = -- colour for taxobox and taxonomy listings
--[[========================================================================= Limit the maximum depth of a taxonomic hierarchy that can be traversed; avoids excessive processing time and protects against incorrectly set up hierarchies, e.g. loops. The value can be obtained externally via 100 =============================================================================]] local MaxSearchLevels = 100
function p.getMaxSearchLevels() return MaxSearchLevels end
--[[========================== taxoboxColour ================================ Determines the correct colour for a taxobox, by searching up the taxonomic hierarchy from the supplied taxon for the first taxon (other than 'incertae sedis') that sets a taxobox colour. It is assumed that a valid taxobox colour is defined using CSS rgb() syntax. If no taxon that sets a taxobox colour is found, then 'transparent' is returned unless the taxonomic hierarchy is too deep, when the error colour is returned. Usage: transparent =============================================================================]] function p.taxoboxColour(frame) return p.getTaxoboxColour(frame, frame.args[1] or ) end
function p.getTaxoboxColour(frame, currTaxon) -- note that colour is global to this function; default is empty string local i = 1 -- count levels processed local searching = currTaxon ~= -- still searching for a colour? local foundICTaxon = false -- record whether 'incertae sedis' found while searching and i <= MaxSearchLevels do local plainCurrTaxon, dummy = l.stripExtra(currTaxon) -- remove trailing text after / if string.lower(plainCurrTaxon) == 'incertae sedis' then foundICTaxon = true else local possibleColour = frame:expandTemplate{ title = 'Template:Taxobox colour', args = { plainCurrTaxon } } if string.sub(possibleColour,1,3) == 'rgb' then colour = possibleColour searching = false end end if searching then local ok, parent = p.getTaxonInfoItem(frame, currTaxon, 'parent') if ok and parent ~= then currTaxon = parent i = i + 1 else searching = false -- run off the top of the hierarchy or tried to use non-existent taxonomy template end end end if colour == then if foundICTaxon then colour = frame:expandTemplate{ title = 'Template:Taxobox colour', args = { 'incertae sedis' } } elseif searching then -- hierarchy exceeds MaxSearchLevels levels colour = frame:expandTemplate{ title = 'Template:Taxobox/Error colour', args = { } } else colour = 'transparent' end end return colour end
--[[= = = = = = = = = = = = = topLevelTaxon = = = = = = = = = = = = = = = = Defines the correct top level taxa, one of which should terminate every taxonomic hierarchy encoded in taxonomy templates. = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]] function l.topLevelTaxon(taxon) return taxon == 'Life' or taxon == 'Veterovata' or taxon == 'Ichnos' end
--[[=========================== taxoboxList ================================= Returns the rows of taxa in an automated taxobox, based on the taxonomic hierarchy for the supplied taxon. Usage: Lua error at line 156: attempt to index a nil value. =============================================================================]] function p.taxoboxList(frame) local currTaxon = frame.args[1] or if currTaxon == then return end local displayN = (tonumber(frame.args['display_taxa']) or 1) + 1 local authTable = {} authTable[1] = frame.args['authority'] or authTable[2] = frame.args['parent_authority'] or authTable[3] = frame.args['gparent_authority'] or authTable[4] = frame.args['ggparent_authority'] or authTable[5] = frame.args['gggparent_authority'] or local boldFirst = frame.args['bold_first'] or 'link' -- values 'link' or 'bold' local virus = frame.args['virus'] or 'no' -- values 'yes' or 'no' local offset = tonumber(frame.args['offset'] or 0) -- adjust the authority table if 'authority' refers to a rank lower than the target taxon if offset ~= 0 then for i = 1, 5 do local j = i + offset if j <= 5 then authTable[i] = authTable[j] else authTable[i] = end end end local taxonTable, taxonRankTable = l.makeTable(frame, currTaxon) local res = local topTaxonN = taxonTable.n -- display all taxa above possible greatgreatgrandparent, without authority for i = topTaxonN, 6, -1 do res = res .. l.showTaxon(frame, taxonTable[i], taxonRankTable[i], topTaxonN==i, , displayN >= i, , virus) end -- display all taxa above possible parent, with authority if given for i = math.min(topTaxonN, 5), 2, -1 do res = res .. l.showTaxon(frame, taxonTable[i], taxonRankTable[i], topTaxonN==i, authTable[i], displayN >= i, , virus) end -- display target taxon, always displayed and emboldened res = res .. l.showTaxon(frame, taxonTable[1], taxonRankTable[1], topTaxonN==1, authTable[1], true, boldFirst, virus) return res end
--[[= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
Show one taxon row in a taxobox.
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]]
function l.showTaxon(frame, taxon, rank, isTopTaxon, auth, force, boldFirst, virus)
-- it's an error if this is the top taxon and it's not a top level taxon (e.g. "Life")
if isTopTaxon then
if l.topLevelTaxon(taxon) then
return -- don't display a top level taxon
elseif mw.title.new('Taxonomy/'..taxon, 'Template').exists then
-- taxonomy template for this taxon has no parent specified
return frame:expandTemplate{ title = 'Template:Create taxonomy', args = {taxon, msg='Taxonomy template does not specify a parent'} } .. '\n' .. TableRow
else
-- no taxonomy template for this taxon
return frame:expandTemplate{ title = 'Template:Create taxonomy', args = {taxon, msg='Missing taxonomy template'} } .. '\n' .. TableRow
end
else
-- if showing is not already forced, force if it's a principal rank or an authority is specified
force = force or frame:expandTemplate{ title = 'Template:Principal rank', args = {rank} } == 'yes' or
auth ~=
if not force then
-- if showing is still not already forced, force if the taxonomy template has 'always_display' set
local ok, alwaysDisplay = p.getTaxonInfoItem(frame, taxon, 'always_display')
force = alwaysDisplay == 'yes' or alwaysDisplay == 'true'
end
if force then
local res = l.tableCell(frame:expandTemplate{ title = 'Template:Anglicise rank', args = {rank} } .. ':')
local bold = 'no'
if boldFirst == 'bold' then bold = 'yes' end
if auth ~= then
auth = '
' .. auth .. ''
end
local res = res .. l.tableCell(l.getTaxonLink(frame, taxon, rank, bold, , , virus) .. auth) -- italic, abbreviated
return res .. TableRow
else
return
end
end
end
--[[========================== taxonomyList ================================= Returns the cells of the taxonomy table displayed on the right hand side of "Template:Taxonomy...." pages.
Usage:
Bold ranks show taxa that will be shown in taxoboxes
because rank is principal or always_display=yes.
| Ancestral taxa | |||
|---|---|---|---|
| Unrecognized taxon (fix): | TAXON | ||
=============================================================================]] function p.taxonomyList(frame) local currTaxon = frame.args[1] or if currTaxon == then return '{|class="infobox biota"\n' .. TableRow .. l.tableCell() .. l.tableCell('ERROR: no taxon supplied') .. TableEnd end local taxonTable, taxonRankTable = l.makeTable(frame, currTaxon) local rankValTable = l.getRankTable() local lastRankVal = 1000000 local orderOk = true -- check whether the taxonomy is for viruses; use already determined taxon colour if possible local virus = 'no' local taxoColour = colour if taxoColour == then if taxonTable[taxonTable.n] == 'Ichnos' or taxonTable[taxonTable.n] == 'Veterovata' then taxoColour = frame:expandTemplate{ title = 'Template:Taxobox colour', args = { taxonTable[taxonTable.n] } } else taxoColour = frame:expandTemplate{ title = 'Template:Taxobox colour', args = { taxonTable[taxonTable.n - 1] } } end end if taxoColour == frame:expandTemplate{ title = 'Template:Taxobox colour', args = { 'virus' } } then virus = 'yes' end -- add information message
local res = '
Bold ranks show taxa that will be shown in taxoboxes
because rank is principal or always_display=yes.
\n'
-- start table res = res .. '{| class="infobox biota" style="text-align: left; font-size:100%"\n' .. TableRow .. '! colspan=4 style="text-align: center; background-color: ' .. taxoColour .. '"|Ancestral taxa\n' -- deal first with the top level taxon; if there are no errors, it should be Life/Veterovata/Ichnos, which are -- not displayed local taxon = taxonTable[taxonTable.n] if not l.topLevelTaxon(taxon) then local msg = 'Taxonomy template missing' if mw.title.new('Taxonomy/'..taxon, 'Template').exists then msg = 'Parent taxon needed' end res = res .. TableRow .. l.tableCell('colspan=2', frame:expandTemplate{title = 'Template:Create taxonomy', args = {taxon, msg = msg}}) end -- now output the rest of the table local currRankVal for i = taxonTable.n-1, 1, -1 do -- check ranks are in right order in the hierarchy taxon = taxonTable[i] local rank = taxonRankTable[i] currRankVal = l.lookupRankVal(rankValTable, rank) if currRankVal then orderOk = currRankVal < lastRankVal if orderOk then lastRankVal = currRankVal end else orderOk = true end -- see if the row will be displayed in a taxobox; bold the rank if so local boldRank = false local ok, alwaysDisplay = p.getTaxonInfoItem(frame, taxon, 'always_display') if ok and (alwaysDisplay == 'yes' or alwaysDisplay == 'true') then boldRank = true else boldRank = frame:expandTemplate{ title = 'Template:Principal rank', args = {rank} } == 'yes' end -- now return a row of the taxonomy table with anomalous ranks marked local errorStr = if not orderOk then errorStr = 'yes' end local link = l.getTaxonLink(frame, taxon, rank, , , , virus) -- bold, italic, abbreviated res = res .. l.taxonomyListRow(frame, taxon, rank, link, boldRank, errorStr) end -- close table res = res .. TableEnd -- error-tracking for taxonomy templates -- if the last row has an anomalous rank, put the page in an error-tracking category local errCat1 = if not orderOk then errCat1 = '\n' end -- if the last row has a taxon name in the page name that does not match the link text, -- put the taxonomy template in a tracking category local dummy, linkText = p.getTaxonInfoItem(frame, taxon, 'link_text') local match = l.matchTaxonLink(taxon, linkText, currRankVal and currRankVal < rankValTable['genus']) local errCat2 = if not match then errCat2 = '\n' end if errCat1..errCat2 ~= then res = res .. frame:expandTemplate{ title = 'Template other', args = { errCat1..errCat2} } end return res end
--[[ = = = = = = = = = = = = = = taxonomyListRow = = = = = = = = = = = = = = Returns a single row of the taxonomy table displayed on the right hand side
of "Template:Taxonomy...." pages.
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]] function l.taxonomyListRow(frame, taxon, rank, link, boldRank, error) local res = if taxon == or rank == then return res end local baseTaxon, qualifier = l.stripExtra(taxon) -- if appropriate, make it clear that some taxa have been skipped via a ... row if qualifier == '/skip' then res = res .. TableRow .. l.tableCell('.....') .. l.tableCell('.....') end -- now generate a row of the table res = res .. TableRow local cellContent = local anglicizedRank = frame:expandTemplate{ title = 'Template:Anglicise rank', args = { rank } } if boldRank then cellContent = cellContent .. '' .. anglicizedRank .. ':' else cellContent = cellContent .. anglicizedRank .. ':' end if error == 'yes' then cellContent = '' .. cellContent .. '' end res = res .. l.tableCell(cellContent) .. l.tableCell('' .. link .. '') .. l.tableCell('' .. qualifier .. '') .. l.tableCell('' .. frame:expandTemplate{ title = 'Template:Edit a taxon', args = { taxon } } .. '') return res end
--[[========================= callTaxonomyKey =============================== Prepares for, and then calls, Template:Taxonomy key to display a taxonomy template page. It does this by building up the information the template requires, following one 'same as' link, if required. Usage:
Bold ranks show taxa that will be shown in taxoboxes
because rank is principal or always_display=yes.
| Ancestral taxa |
|---|
| Ancestral taxa | |||
|---|---|---|---|
| You're currently creating: | [[ ]] | ||
Template:Error If the table below looks correct, then the necessary taxonomic information for the target taxon exists.
Template:Taxonomy key/missing template Not sure why you're here? Tell Keenan about it.
=============================================================================]] local PARENT = 1 local RANK = 2 local LINK_TARGET = 3 local LINK_TEXT = 4 local ALWAYS_DISPLAY = 5 local EXTINCT = 6 local SAME_AS = 7 local REFS = 8 function p.callTaxonomyKey(frame) local taxon = frame.args['taxon'] or local parent = frame.args['parent'] or local rank = frame.args['rank'] or local extinct = string.lower(frame.args['extinct']) or local alwaysDisplay = string.lower(frame.args['always_display']) or local linkTarget = frame.args['link_target'] or local linkText = frame.args['link_text'] or -- this is the "raw" link text, and can be local refs = frame.args['refs'] or local sameAsTaxon = frame.args['same_as'] or if sameAsTaxon ~= then -- try using the 'same as' taxon; it's an error if it doesn't exist local ok, sameAsInfoStr = pcall(frame.expandTemplate, frame, { title = 'Template:Taxonomy/' .. sameAsTaxon, args = {['machine code'] = 'all' } }) if ok then local sameAsInfo = mw.text.split(sameAsInfoStr, '$', true) --'same as' taxon's taxonomy template must not have a 'same as' link if sameAsInfo[SAME_AS] == then if parent == then parent = sameAsInfo[PARENT] end if rank == then rank = sameAsInfo[RANK] end if extinct == then extinct = string.lower(sameAsInfo[EXTINCT]) end if alwaysDisplay == then alwaysDisplay = string.lower(sameAsInfo[ALWAYS_DISPLAY]) end if linkTarget == then linkTarget = sameAsInfo[LINK_TARGET] end if linkText == then linkText = sameAsInfo[LINK_TEXT] end if refs == and parent == sameAsInfo[PARENT] then refs = sameAsInfo[REFS] end else return 'Error: attempt to follow two "same as" links:same_as = ' .. sameAsTaxon .. ', but Template:Taxonomy/' .. sameAsTaxon .. ' also has asame_as parameter.'
end
else
return frame:expandTemplate{ title = 'Template:Taxonomy key/missing template', args = {taxon=sameAsTaxon, msg='given as the value of same as'} }
end
end
local link = linkTarget
if linkText ~= and linkText ~= linkTarget then link = link .. "|" .. linkText end
-- check consistency of extinct status; if this taxon is not extinct, parent must not be either
local extinctError = 'no'
if parent ~= and (extinct == or extinct == 'no' or extinct == 'false') then
local ok, parentExtinct = p.getTaxonInfoItem(frame, parent, 'extinct')
if ok and (parentExtinct == 'yes' or parentExtinct == 'true') then extinctError = 'yes' end
end
return frame:expandTemplate{ title = 'Template:Taxonomy key',
args = {taxon=taxon, parent=parent, rank=rank, extinct=extinct, always_display=alwaysDisplay, link_target=linkTarget, link=link, refs=refs, same_as=sameAsTaxon, extinct_error = extinctError} }
end
--[[============================= showRefs ==================================
Shows the refs field in a taxonomy template, handing incertae sedis taxa and
using '–' for absent refs.
Usage: REFS
=============================================================================]]
function p.showRefs(frame)
local taxonName = frame.args[1] or
local refs = frame.args[2] or
return l.doShowRefs(taxonName, refs)
end
--[[= = = = = = = = = = = = = = doShowRefs = = = = = = = = = = = = = = = = =
Show the refs field in a taxonomy template.
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]]
function l.doShowRefs(taxonName, refs)
if mw.text.split(taxonName, '/', true)[1] == 'Incertae sedis' then
refs = 'not applicable (incertae sedis)'
elseif refs == then
refs = '–'
end
return refs
end
--[[============================ taxonInfo ==================================
Extracts and returns information from Template:Taxonomy/TAXON, following
one 'same as' link if required.
Usage: Template:Taxonomy/TAXON
ITEM is one of: 'parent', 'rank', 'link target', 'link text', 'extinct',
'always display', 'refs', 'same as' or 'all'.
If ITEM is not specified, the default is 'all' – all values in a single string
separated by '$'.
=============================================================================]]
function p.taxonInfo(frame)
local taxon = frame.args[1] or
local item = frame.args[2] or
if item == then item = 'all' end
local ok, info = p.getTaxonInfoItem(frame, taxon, item)
return info
end
--[[= = = = = = = = = = = getTaxonInfoItem = = = = = = = = = = = = = = = = =
Utility function to extract an item of information from a
taxonomy template, following one 'same as' link if required.
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]]
function p.getTaxonInfoItem(frame, taxon, item)
local ok, info
-- item == 'dagger' is a special case
if item == 'dagger' then
ok, info = p.getTaxonInfoItem(frame, taxon, 'extinct')
if ok then
if info == 'yes' or info == 'true' then
info = '†'
else
info =
end
end
-- item ~= 'dagger'
else
ok, info = pcall(frame.expandTemplate, frame, { title = 'Template:Taxonomy/' .. taxon, args = {['machine code'] = item } })
if ok then
if info == then
-- try 'same as'
local sameAsTaxon = frame:expandTemplate{ title = 'Template:Taxonomy/' .. taxon, args = {['machine code'] = 'same as' } }
if sameAsTaxon ~= then
ok, info = pcall(frame.expandTemplate, frame, { title = 'Template:Taxonomy/' .. sameAsTaxon, args = {['machine code'] = item } })
end
end
end
end
if ok then
-- if item is 'link_text', trim info and check whether '(?)' needs to be added
if item == 'link_text' then
-- there is a newline at the end of linkText when taxonomy template has "|link = LINK_TARGET|LINK_TEXT"
info = mw.text.trim(info)
if string.sub(taxon, -2) == '/?' and not string.find(info, '?', 1, true) then
info = info .. ' (?)'
end
end
else
info = 'Template:Taxonomy/' .. taxon .. '' --error indicator in code before conversion to Lua
end
return ok, info
end
--[[============================ taxonLink ==================================
Returns a wikilink to a taxon, if required including '†' before it and
' (?)' after it, and optionally italicized or bolded without a wikilink.
Usage:
: text of the wikilink (may be same as link_target), without †, italics, etc.
=============================================================================]]
function p.taxonLink(frame)
local taxon = frame.args['taxon'] or
local extinct = string.lower(frame.args['extinct'] or )
local bold = frame.args['bold'] or
local italic = frame.args['italic'] or
local abbreviated = frame.args['abbreviated'] or
local linkTarget = frame.args['link_target'] or
local linkText = frame.args['link_text'] or frame.args['plain_link_text'] or --temporarily allow alternative args
return l.makeLink(taxon, extinct, bold, italic, abbreviated, linkTarget, linkText)
end
--[[= = = = = = = = = = = = = = getTaxonLink = = = = = = = = = = = = = = = =
Internal function to drive l.makeLink().
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]]
function l.getTaxonLink(frame, taxon, rank, bold, italic, abbreviated, virus)
local ok, extinct = p.getTaxonInfoItem(frame, taxon, 'extinct')
if italic == then
italic = frame:expandTemplate{ title = 'Template:Is italic taxon', args = { rank, virus = virus } }
end
local ok, linkTarget = p.getTaxonInfoItem(frame, taxon, 'link_target')
local ok, linkText = p.getTaxonInfoItem(frame, taxon, 'link_text')
return l.makeLink(taxon, extinct, bold, italic, abbreviated, linkTarget, linkText)
end
--[[= = = = = = = = = = = = = = makeLink = = = = = = = = = = = = = = = = = =
Actually make the link.
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]]
function l.makeLink(taxon, extinct, bold, italic, abbreviated, linkTarget, linkText)
local dummy
-- if link text is missing, try to find a replacement
if linkText == then
if string.find(taxon, 'Incertae sedis', 1, true) then
linkText = "incertae sedis"
linkTarget = 'Incertae sedis'
else
linkText, dummy = l.stripExtra(taxon)
end
end
if linkTarget == then linkTarget = linkText end
if italic == 'yes' then linkText = TaxonItalics.italicizeTaxonName(linkText, false, abbreviated=='yes') end
local link =
if bold == 'yes' then link = '' .. linkText .. ''
else
if linkTarget == linkText then link = linkText
else link = linkTarget .. '|' .. linkText
end
link = '' .. link .. ''
end
if (extinct == 'yes' or extinct == 'true') and not string.find(link, '†', 1, true) then
link = '†' .. link
end
if string.sub(taxon, -2) == '/?' and not string.find(link, '?', 1, true) then
link = link .. ' (?)'
end
return link
end
--[[========================== show ================================
Returns a wikitable showing the ranks and their values as set up by
getRankTable().
Usage:
| Parent: | |
| Rank: | |
| Link: | value of 'link' parameter in taxonomy template|value of parameter 2 in taxonomy template(links to value of 'link' parameter in taxonomy template)
|
| Extinct: | no |
| Always displayed: | no |
| Taxonomic references: | – |
| Parent's taxonomic references: | Template:Taxonomy/ |
| Rank | Shown as | Value |
|---|---|---|
| infratribus | Infratribe | 697 |
| infraphylum | Infraphylum | 1497 |
| infraordo | Infraorder | 997 |
| cohort | Cohort | 1100 |
| micrordo | Microrder | 995 |
| genus | Genus | 600 |
| grandordo | Grandorder | 1005 |
| microphylum | Microphylum | 1495 |
| sublegio | Sublegion | 1198 |
| zoosubsectio | Subsection | 898 |
| parvclassis | Parvclass | 1396 |
| supercohort | Supercohort | 1103 |
| nanordo | Nanorder | 994 |
| parafamilia | Parafamily | 800 |
| zoosubdivisio | Subdivision | 1298 |
| regnum | Kingdom | 1600 |
| magnordo | Magnorder | 1006 |
| mirordo | Mirorder | 1004 |
| varietas | Variety | 200 |
| tribus | Tribe | 700 |
| superfamilia | Superfamily | 803 |
| superphylum | Superphylum | 1503 |
| subregnum | Subkingdom | 1598 |
| infraregnum | Infrakingdom | 1597 |
| grandordo-mb | Grandorder | 1002 |
| supertribus | Supertribe | 703 |
| zoodivisio | Division | 1300 |
| superlegio | Superlegion | 1203 |
| zoosectio | Section | 900 |
| superdivisio | Superdivision | 1503 |
| superclassis | Superclass | 1403 |
| subtribus | Subtribe | 698 |
| divisio | Division | 1500 |
| subterclassis | Subterclass | 1396 |
| classis | Class | 1400 |
| subspecies | Subspecies | 298 |
| infraclassis | Infraclass | 1397 |
| subcohort | Subcohort | 1098 |
| subfamilia | Subfamily | 798 |
| subsectio | Subsection | 498 |
| superregnum | Superkingdom | 1603 |
| species | Species | 300 |
| subphylum | Subphylum | 1498 |
| subordo | Suborder | 998 |
| subgenus | Subgenus | 598 |
| ordo | Order | 1000 |
| subdivisio | Subdivision | 1498 |
| subclassis | Subclass | 1398 |
| legio | Legion | 1200 |
| sectio | Section | 500 |
| domain | Domain | 1700 |
| superdomain | Superdomain | 1703 |
| superordo | Superorder | 1003 |
| parvordo | Parvorder | 996 |
| familia | Family | 800 |
| nanophylum | Nanophylum | 1494 |
| infralegio | Infralegion | 1197 |
| forma | Form | 100 |
| mirordo-mb | Mirorder | 1001 |
| phylum | Phylum | 1500 |
=============================================================================]] function p.showRankTable(frame) local rankTable = l.getRankTable() local res = '{| class="wikitable sortable"\n|+ Ranks checked in taxonomy templates\n! Rank !! Shown as !! Value\n' for k, v in pairs(rankTable) do local rankShown = frame:expandTemplate{ title = 'Template:Anglicise rank', args = { k } } res = res .. TableRow .. l.tableCell(k) .. l.tableCell(rankShown) .. l.tableCell(v) end return res .. TableEnd end
--[[============================== find ===================================== Returns the taxon above the specified taxon with a given rank. Usage: rank not found =============================================================================]] function p.find(frame) local currTaxon = frame.args[1] or if currTaxon == then return 'no taxon supplied' end local rank = frame.args[2] or if rank == then return 'no rank supplied' end local inHierarchy = true -- still in the taxonomic hierarchy or off the top? local searching = true -- still searching while inHierarchy and searching do local ok, parent = p.getTaxonInfoItem(frame, currTaxon, 'parent') if ok and parent ~= then currTaxon = parent local ok, currRank = p.getTaxonInfoItem(frame, currTaxon, 'rank') if currRank == rank then searching = false end else inHierarchy = false end end if inHierarchy and not searching then return currTaxon else return 'rank not found' end end
--[[=============================== nth ===================================== External utility function primarily intended for use in checking and debugging. Returns the nth level above a taxon in a taxonomic hierarchy, where the taxon itself is counted as the first level. Usage: Lua error at line 584: attempt to compare number with nil. =============================================================================]] function p.nth(frame) local currTaxon = frame.args[1] or if currTaxon == then return 'ERROR: no taxon supplied' end local n = tonumber(frame.args['n'] or 1) if n > MaxSearchLevels then return 'Exceeded maximum number of levels allowed (' .. MaxSearchLevels .. ')' end local i = 1 local inHierarchy = true -- still in the taxonomic hierarchy or off the top? while i < n and inHierarchy do local ok, parent = p.getTaxonInfoItem(frame, currTaxon, 'parent') if ok and parent ~= then currTaxon = parent i = i + 1 else inHierarchy = false end end if inHierarchy then return currTaxon else return 'Level ' .. n .. ' is past the top of the taxonomic hierarchy' end end
--[[============================= nLevels =================================== External utility function primarily intended for use in checking and debugging. Returns number of levels in a taxonomic hierarchy, starting from the supplied taxon as level 1. Usage: 1 =============================================================================]] function p.nLevels(frame) local currTaxon = frame.args[1] or if currTaxon == then return 'ERROR: no taxon supplied' end local i = 1 local inHierarchy = true -- still in the taxonomic hierarchy or off the top? while inHierarchy and i < MaxSearchLevels do local ok, parent = p.getTaxonInfoItem(frame, currTaxon, 'parent') if ok and parent ~= then currTaxon = parent i = i + 1 else inHierarchy = false end end if inHierarchy then return MaxSearchLevels .. '+' else return i end end
--[[============================= listAll =================================== External utility function primarily intended for use in checking and debugging. Returns a comma separated list of a taxonomic hierarchy, starting from the supplied taxon. Usage: TAXON- =============================================================================]] function p.listAll(frame) local currTaxon = frame.args[1] or if currTaxon == then return 'ERROR: no taxon supplied' end return l.doListAll(l.makeTable(frame, currTaxon)) end
function l.doListAll(taxonTable, taxonRankTable) local lst = taxonTable[1] .. '-' .. tostring(taxonRankTable[1]) for i = 2, taxonTable.n, 1 do lst = lst .. ', ' .. taxonTable[i] .. '-' .. taxonRankTable[i] end return lst end
--[[========================================================================= Internal functions =============================================================================]]
--[[= = = = = = = = = = = = stripExtra = = = = = = = = = = = = = = = = = = = Internal utility function to strip off any extra parts of a taxon name, i.e. anything after a '/'. Thus 'Felidae/?' would be split into 'Felidae' and '?'. = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]] function l.stripExtra(taxonName) local i = mw.ustring.find(taxonName, '/', 1, true) if i then return mw.ustring.sub(taxonName, 1, i-1), mw.ustring.sub(taxonName, i, -1) else return taxonName, end end
--[[= = = = = = = = = = = = splitTaxonName = = = = = = = = = = = = = = = = = Internal utility function to split a taxon name into its parts and return them. Possible formats include:
- taxon
- taxon (disambig)
- taxon (Subgenus)
- taxon/qualifier
- combinations, e.g. taxon (disambig)/qualifier
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]] function l.splitTaxonName(taxon) -- get any qualifier present local qualifier = local i = mw.ustring.find(taxon, '/', 1, true) if i then qualifier = mw.ustring.sub(taxon, i+1, -1) taxon = mw.ustring.sub(taxon, 1, i-1) end -- get any disambiguator or subgenus local disambig = local subgenus = i = mw.ustring.find(taxon, ' (', 1, true) if i then local parenTerm = mw.ustring.sub(taxon, i+2, -2) taxon = mw.ustring.sub(taxon, 1, i-1) local char1 = mw.ustring.sub(parenTerm, 1, 1) if char1 == mw.ustring.lower(char1) then disambig = parenTerm else subgenus = parenTerm end end return taxon, disambig, subgenus, qualifier end
--[[= = = = = = = = = = = = matchTaxonLink = = = = = = = = = = = = = = = = = Function to determine whether the taxon name derived from the name of the taxonomy template (passed in the parameter taxon) matches the link text (passed in the parameter linkText). The taxon name may have any of the formats:
- baseTaxon/qualifier
- baseTaxon (disambig)
- baseTaxon (Subgenus) [distinguished by the capital letter]
- a qualifier may be present after the previous two formats.
Examples of matches (baseTaxon ~ linkText):
- Pinus ~ Pinus
- Pinus sect. Trifoliae ~ Pinus sect. Trifoliae
- Pinus sect. Trifoliae ~ Pinus sect. Trifoliae [italic markers ignored]
- Pinus sect. Trifoliae ~ P. sect. Trifoliae [abbreviated genus name matches]
- Bombus (Pyrobombus) ~ Bombus (Pyrobombus)
- Bombus (Pyrobombus) ~ B. (Pyrobombus)
- Bombus (Pyrobombus) ~ Pyrobombus [link text may just be the subgenus]
- Heteractinida ~ "Heteractinida" [double-quotes are ignored in link text]
- Incertae sedis ~ anything [link text is ignored for matching in this case]
- Cetotheriidae with qualifier=? ~ Cetotheriidae (?)
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]] function l.matchTaxonLink(taxon, linkText, rankBelowGenus) local dummy linkText, dummy = mw.ustring.gsub(linkText, "", ) -- remove any italic wikitext in the link text linkText, dummy = mw.ustring.gsub(linkText, '<.->', ) -- strip all tags used to format the link text linkText, dummy = mw.ustring.gsub(linkText, '"', ) -- remove any occurrences of " in the link text local baseTaxon, disambig, subgenus, qualifier = l.splitTaxonName(taxon) -- split up the taxon name local match = linkText == baseTaxon or linkText == subgenus or linkText == baseTaxon .. ' (' .. subgenus .. ')' or linkText == mw.ustring.sub(baseTaxon, 1, 1) .. '. (' .. subgenus .. ')' or baseTaxon == 'Incertae sedis' or rankBelowGenus and linkText == mw.ustring.gsub(baseTaxon, '([A-Z]).- (.*)', '%1. %2') or mw.ustring.find(qualifier, '?', 1, true) and mw.ustring.find(linkText, baseTaxon, 1, true) == 1 return match end
--[[= = = = = = = = = = = = = makeTable = = = = = = = = = = = = = = = = = = = Internal utility function to return a table (array) constructed from a taxonomic hierarchy stored in "Template:Taxonomy/..." templates. TABLE.n holds the total number of taxa; TABLE[1]..TABLE[TABLE.n] the taxon names. The last taxon in the table will either (a) have a taxonomy template but with no parent given (e.g. 'Life') or (b) not have a taxonomy template. = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]] function l.makeTable(frame, currTaxon) local taxonTable = {} local taxonRankTable = {} local ok, rank, parent local i = 1 local topReached = false -- reached the top of the taxonomic hierarchy? repeat taxonTable[i] = currTaxon ok, rank = p.getTaxonInfoItem(frame, currTaxon, 'rank') if ok then taxonRankTable[i] = string.lower(rank) else taxonRankTable[i] = end ok, parent = p.getTaxonInfoItem(frame, currTaxon, 'parent') if ok and parent ~= then currTaxon = parent i = i + 1 else topReached = true -- reached the top of the hierarchy or tried to use a non-existent taxonomy template end until topReached or i > MaxSearchLevels taxonTable.n = math.min(i, MaxSearchLevels) return taxonTable, taxonRankTable end
--[[= = = = = = = = = = = = getRankTable = = = = = = = = = = = = = = = = = = Internal utility function to set up a table of numerical values corresponding to 'Linnaean' ranks, with upper ranks having higher values. In a valid taxonomic hierarchy, a lower rank should never have a higher value than a higher rank. The actual numerical values are arbitrary so long as they are ordered. The ranks should correspond to those in Template:Anglicise ranks. = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]] function l.getRankTable() return { classis = 1400, cohort = 1100, divisio = 1500, domain = 1700, familia = 800, forma = 100, genus = 600, grandordo = 1005, ['grandordo-mb'] = 1002, infraclassis = 1397, infralegio = 1197, infraordo = 997, infraphylum = 1497, infraregnum = 1597, infratribus = 697, legio = 1200, magnordo = 1006, microphylum = 1495, micrordo = 995, mirordo = 1004, ['mirordo-mb'] = 1001, nanophylum = 1494, nanordo = 994, ordo = 1000, parafamilia = 800, parvclassis = 1396; -- same as subterclassis parvordo = 996, phylum = 1500, regnum = 1600, sectio = 500, --series = 400, used too inconsistently to check species = 300, subclassis = 1398, subcohort = 1098, subdivisio = 1498, subfamilia = 798, subgenus = 598, sublegio = 1198, subordo = 998, subphylum = 1498, subregnum = 1598, subsectio = 498, subspecies = 298, subterclassis = 1396; -- same as parvclassis subtribus = 698, superclassis = 1403, supercohort = 1103, superdivisio = 1503, superdomain = 1703, superfamilia = 803, superlegio = 1203, superordo = 1003, superphylum = 1503, superregnum = 1603, supertribus = 703, tribus = 700, varietas = 200, zoodivisio = 1300, zoosectio = 900, zoosubdivisio = 1298, zoosubsectio = 898, } end
--[[= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = Function to look up the arbitrary numerical value of a rank in a rank value table. "Ichno" and "oo" ranks are not stored separately, so if present the prefix is removed. = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]] function l.lookupRankVal(rankValTable, rank) local rankVal = rankValTable[rank] if not rankVal then -- may be an "ichno" or "oo" ranks rank = mw.ustring.gsub(mw.ustring.gsub(rank, '^ichno', ), '^oo', ) if rank == 'rdo' then rank = 'ordo' end rankVal = rankValTable[rank] end return rankVal end
--[[= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =]] function l.tableCell(arg1, arg2) local text, style if arg2 then style = arg1 text = arg2 else style = text = arg1 end local res = '|' if style ~= then res = res .. style .. '|' end return res .. text .. '\n' end
return p