Difference between revisions of "Module:Taxonbar"

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Line 1: Line 1:
 
require('Module:No globals')
 
require('Module:No globals')
  
−
local conf = require( "Module:Taxonbar/conf" )
+
local conf = require( "Module:Taxonbar/conf" ) -- configuration module
 +
local TaxonItalics = require("Module:TaxonItalics") -- use a function from Module:TaxonItalics to italicize a taxon name
  
 
local function getIdsFromWikidata( item, property )
 
local function getIdsFromWikidata( item, property )
Line 17: Line 18:
  
 
local function getLink( property, val )
 
local function getLink( property, val )
−
local link = ''
+
local link, returnVal = "", {}
 +
 +
returnVal.isError = false
 +
 
if mw.ustring.find( val, '//' ) then
 
if mw.ustring.find( val, '//' ) then
 
link = val
 
link = val
 
else
 
else
−
if type(property) == 'number' then
+
if type(property) == 'number' and property > 0 then
−
link = mw.wikibase.getEntityObject('P'..property).claims.P1630[1].mainsnak.datavalue.value
+
local entityObject = mw.wikibase.getEntity('P'..property)
 +
local dataType
 +
 +
if entityObject then dataType = entityObject.datatype
 +
else returnVal.isError = true end
 +
 +
if dataType == "external-id" then
 +
local formatterURL = entityObject:getBestStatements('P1630')[1]
 +
if formatterURL then link = formatterURL.mainsnak.datavalue.value end
 +
elseif dataType == "url" then
 +
local subjectItem = entityObject:getBestStatements('P1629')[1]
 +
if subjectItem then
 +
local officialWebsite = mw.wikibase.getEntity(subjectItem.mainsnak.datavalue.value.id):getBestStatements('P856')[1]
 +
if officialWebsite then link = officialWebsite.mainsnak.datavalue.value end
 +
end
 +
elseif dataType == "string" then
 +
local formatterURL = entityObject:getBestStatements('P1630')[1]
 +
if formatterURL then
 +
link = formatterURL.mainsnak.datavalue.value
 +
else
 +
local subjectItem = entityObject:getBestStatements('P1629')[1]
 +
if subjectItem then
 +
local officialWebsite = mw.wikibase.getEntity(subjectItem.mainsnak.datavalue.value.id):getBestStatements('P856')[1]
 +
if officialWebsite then link = officialWebsite.mainsnak.datavalue.value end
 +
end
 +
end
 +
else
 +
returnVal.isError = true
 +
end
 
elseif type(property) == 'string' then
 
elseif type(property) == 'string' then
 
link = property
 
link = property
 
end
 
end
−
link = mw.ustring.gsub(link, '$1', val)
+
 +
local valurl = val
 +
if mw.ustring.find( link, 'antweb.org' ) then valurl = mw.ustring.gsub(valurl, " ", "%%20") end
 +
valurl = mw.ustring.gsub(valurl,"%%","%%%%")
 +
link = mw.ustring.gsub(link, '$1', valurl)
 
end
 
end
 +
 
link = mw.ustring.gsub(link, '^[Hh][Tt][Tt][Pp]([Ss]?)://', 'http%1://') -- fix wikidata URL
 
link = mw.ustring.gsub(link, '^[Hh][Tt][Tt][Pp]([Ss]?)://', 'http%1://') -- fix wikidata URL
 
val = mw.ustring.match(val, '([^=/]*)/?$') -- get display name from end of URL
 
val = mw.ustring.match(val, '([^=/]*)/?$') -- get display name from end of URL
 
if mw.ustring.find( link, '//' ) then
 
if mw.ustring.find( link, '//' ) then
−
return '['..link..' '..val..']'
+
returnVal.text = '['..link..' '..mw.text.encode(mw.uri.decode(val, "PATH"),'%[%]')..']'
 +
elseif link == "" then
 +
returnVal.text = val
 
else
 
else
−
return '<span class="external">[['..link..'|'..val..']]</span>'
+
returnVal.text = '<span class="external">[['..link..'|'..val..']]</span>'
 
end
 
end
 +
return returnVal
 
end
 
end
  
Line 43: Line 83:
 
return outStr..'>' .. link .. '</span></span>\n'
 
return outStr..'>' .. link .. '</span></span>\n'
 
else
 
else
−
return '* <span class="error">The identifier ' .. id .. ' ' .. rawValue .. ' is not valid.</span>\n'
+
return '* ' .. mw.text.tag('span', {class='error'}, 'The identifier ' .. id .. ' ' .. rawValue .. ' is not valid.') .. '\n'
 
end
 
end
 
end
 
end
Line 57: Line 97:
  
 
function p.authorityControlTaxon( frame )
 
function p.authorityControlTaxon( frame )
 +
local resolve = require( "Module:ResolveEntityId" )
 
local parentArgs = copyTable(frame:getParent().args)
 
local parentArgs = copyTable(frame:getParent().args)
 +
local currentTitle = mw.title.getCurrentTitle()
 +
local currentEntityId = mw.wikibase.getEntityIdForCurrentPage()
 +
 
local stringArgs = false
 
local stringArgs = false
−
--Make args case insensitive
+
local fromTitleCount, firstRow, rowCount = 1, 0, 0
 +
local outString, errors = "", ""
 +
local tfroms = {} --non-sequential table of unique froms
 +
local ifroms = 0 --integer size of tfroms, b/c Lua
 +
local categories = {
 +
'[[Category:Taxonbars without from parameter]]',
 +
'[[Category:Taxonbars desynced from Wikidata]]',
 +
'', -- [3] placeholder for [[Category:Taxonbars using multiple manual Wikidata items]]
 +
'', -- [4] placeholder for [[Category:Taxonbars with invalid from parameters]]
 +
'', -- [5] placeholder for [[Category:Taxonbars using manual taxon IDs]]
 +
'', -- [6] placeholder for [[Category:Taxonbar pages requiring a Wikidata item]]
 +
'', -- [7] placeholder for [[Category:Taxonbar pages without Wikidata taxon IDs]]
 +
'', -- [8] placeholder for [[Category:Taxonbars with duplicate from parameters]]
 +
'', -- [9] placeholder for [[Category:Taxonbars with manual taxon IDs differing from Wikidata]]
 +
'', --[10] placeholder for [[Category:Taxonbars with manual taxon IDs identical to Wikidata]]
 +
'', --[11] placeholder for [[Category:Taxonbars on possible non-taxon pages]]
 +
'', --[12] placeholder for [[Category:Taxonbars with 20+ taxon IDs]]
 +
'', --[13] placeholder for [[Category:Taxonbars with 25+ taxon IDs]]
 +
'', --[14] placeholder for [[Category:Taxonbars with automatically added basionyms]]
 +
'', --[15] placeholder for [[Category:Taxonbars with automatically added monotypic genera]]
 +
'', --[16] placeholder for [[Category:Taxonbars of monotypic species missing genera]]
 +
}
 +
 +
--Assess the page's relationship with Wikidata
 +
local currentItem = nil
 +
if currentTitle.namespace == 10 then --i.e. Module:Taxonbar/sandbox, Template:Taxonbar/doc, etc.
 +
if resolve._entityid(frame, parentArgs['from']) then
 +
currentItem = mw.wikibase.getEntity(parentArgs['from'])
 +
end
 +
if currentItem == nil then
 +
if resolve._entityid(frame, parentArgs['from1']) then
 +
currentItem = mw.wikibase.getEntity(parentArgs['from1'])
 +
end
 +
end
 +
elseif resolve._entityid(frame, currentEntityId) then
 +
currentItem = mw.wikibase.getEntity(currentEntityId)
 +
else --currentEntityId == nil
 +
categories[6] = '[[Category:Taxonbar pages requiring a Wikidata item]]'
 +
end
 +
if currentItem then
 +
local acceptable = {
 +
  ['Q16521'] = 'taxon',
 +
  ['Q310890'] = 'monotypic taxon',
 +
  ['Q2568288'] = 'ichnotaxon',
 +
  ['Q23038290'] = 'fossil taxon',
 +
  ['Q47487597'] = 'monotypic fossil taxon',
 +
  ['Q42621'] = 'hybrid',
 +
  ['Q235536'] = 'incertae sedis',
 +
  ['Q713623'] = 'clade',
 +
  ['Q848328'] = 'serotype',
 +
  ['Q17487588'] = 'unavailable combination',
 +
}
 +
categories[11] = '[[Category:Taxonbars on possible non-taxon pages]]' --unset if acceptable found
 +
for _, instanceOfState in pairs ( currentItem:getBestStatements('P31') ) do --instance of
 +
local instanceOf = instanceOfState.mainsnak.datavalue.value.id
 +
if acceptable[instanceOf] then
 +
categories[11] = ''
 +
break
 +
end
 +
end
 +
end
 +
 +
--Cleanup args
 
for k, v in pairs( frame:getParent().args ) do
 
for k, v in pairs( frame:getParent().args ) do
 
if type(k) == 'string' then
 
if type(k) == 'string' then
−
v = mw.ustring.lower(v)
+
--make args case insensitive
 
local lowerk = mw.ustring.lower(k)
 
local lowerk = mw.ustring.lower(k)
 
if not parentArgs[lowerk] or parentArgs[lowerk] == '' then
 
if not parentArgs[lowerk] or parentArgs[lowerk] == '' then
 +
parentArgs[k] = nil
 
parentArgs[lowerk] = v
 
parentArgs[lowerk] = v
−
parentArgs[k] = nil
 
 
end
 
end
−
if v and v ~= '' and v ~= 'no' and lowerk ~= 'from' then stringArgs = true end
+
--remap abc to abc1
 +
if not mw.ustring.find(lowerk,"%d$") then --if no number at end of param
 +
if not parentArgs[lowerk..'1'] or parentArgs[lowerk..'1'] == '' then
 +
parentArgs[lowerk] = nil
 +
lowerk = lowerk..'1'
 +
parentArgs[lowerk] = v
 +
end
 +
end
 +
if v and v ~= '' then
 +
--remap "for" to "title"
 +
if mw.ustring.sub(lowerk,1,3) == "for" then
 +
local forTitle = mw.ustring.gsub(lowerk,"^for","title",1)
 +
if parentArgs[forTitle] == '' or not parentArgs[forTitle] then
 +
parentArgs[lowerk] = nil
 +
lowerk = forTitle
 +
parentArgs[lowerk] = v
 +
end
 +
end
 +
--find highest from or title param
 +
if mw.ustring.sub(lowerk,1,4) == "from" then
 +
local fromNumber = tonumber(mw.ustring.sub(lowerk,5,-1))
 +
if fromNumber and fromNumber >= fromTitleCount then fromTitleCount = fromNumber end
 +
--look for duplicate froms while we're here
 +
if mw.ustring.find(v, "^Q%d") then
 +
if tfroms[v] then
 +
categories[8] = '[[Category:Taxonbars with duplicate from parameters]]'
 +
tfroms[v] = tfroms[v] + 1
 +
else
 +
tfroms[v] = 1
 +
ifroms = ifroms + 1
 +
end
 +
if ifroms > 1 then
 +
categories[3] = '[[Category:Taxonbars using multiple manual Wikidata items]]'
 +
end
 +
end
 +
elseif mw.ustring.sub(lowerk,1,5) == "title" then
 +
local titleNumber = tonumber(mw.ustring.sub(lowerk,4,-1))
 +
if titleNumber and titleNumber >= fromTitleCount then fromTitleCount = titleNumber end
 +
elseif mw.ustring.lower(v) ~= 'no' then
 +
stringArgs = true
 +
categories[5] = '[[Category:Taxonbars using manual taxon IDs]]'
 +
end
 +
end
 
end
 
end
 
end
 
end
−
--remap aliases
+
−
for _, a in pairs( conf.aliases ) do
+
--Append basionym to arg list, if not already provided
−
local alias, name = mw.ustring.lower(a[1]), mw.ustring.lower(a[2])
+
if currentItem then
−
if parentArgs[alias] and not parentArgs[name] then
+
local currentBasState = currentItem:getBestStatements('P566')[1] --basionym
−
parentArgs[name] = parentArgs[alias]
+
if currentBasState then
−
parentArgs[alias] = nil
+
local basionymId = currentBasState.mainsnak.datavalue.value.id
 +
if basionymId and resolve._entityid(frame, basionymId) and tfroms[basionymId] == nil then
 +
--check that basionym is a strict instance of taxon
 +
local basionymItem = mw.wikibase.getEntity(basionymId)
 +
if basionymItem then
 +
local acceptable = {
 +
  ['Q16521'] = 'taxon',
 +
  ['Q310890'] = 'monotypic taxon',
 +
  ['Q2568288'] = 'ichnotaxon',
 +
  ['Q23038290'] = 'fossil taxon',
 +
  ['Q47487597'] = 'monotypic fossil taxon',
 +
}
 +
for _, instanceOfState in pairs ( basionymItem:getBestStatements('P31') ) do --instance of
 +
local instanceOf = instanceOfState.mainsnak.datavalue.value.id
 +
if acceptable[instanceOf] then
 +
--housekeeping
 +
tfroms[basionymId] = 1
 +
ifroms = ifroms + 1
 +
fromTitleCount = fromTitleCount + 1
 +
--append basionym & track
 +
parentArgs['from'..fromTitleCount] = basionymId
 +
categories[14] = '[[Category:Taxonbars with automatically added basionyms]]'
 +
break
 +
end end end end end end
 +
 +
--Append monotypic genus/species to arg list of monotypic species/genus, if not already provided
 +
if currentItem then
 +
for _, instanceOfState in pairs ( currentItem:getBestStatements('P31') ) do --instance of
 +
local taxonRank = nil
 +
local parentItem = nil
 +
local parentTaxon = nil
 +
local parentTaxonRank = nil
 +
local parentMonoGenus = nil --holy grail/tbd
 +
local instanceOf = instanceOfState.mainsnak.datavalue.value.id
 +
if instanceOf and (instanceOf == 'Q310890' or instanceOf == 'Q47487597') then --monotypic/fossil taxon
 +
local taxonRankState = currentItem:getBestStatements('P105')[1] --taxon rank
 +
if taxonRankState then taxonRank = taxonRankState.mainsnak.datavalue.value.id end
 +
 +
if taxonRank and taxonRank == 'Q7432' then --species
 +
--is monotypic species; add genus
 +
local parentTaxonState = currentItem:getBestStatements('P171')[1] --parent taxon
 +
if parentTaxonState then parentTaxon = parentTaxonState.mainsnak.datavalue.value.id end
 +
--confirm parent taxon rank == genus & monotypic (too careful/expensive? remove/mod this first if hitting any request limits)
 +
if parentTaxon and resolve._entityid(frame, parentTaxon) then
 +
parentItem = mw.wikibase.getEntity(parentTaxon)
 +
if parentItem then
 +
local parentTaxonRankState = parentItem:getBestStatements('P105')[1] --taxon rank
 +
if parentTaxonRankState then parentTaxonRank = parentTaxonRankState.mainsnak.datavalue.value.id end
 +
if parentTaxonRank and parentTaxonRank == 'Q34740' then -- genus
 +
for _, parentInstanceOfState in pairs ( parentItem:getBestStatements('P31') ) do --instance of
 +
local parentInstanceOf = parentInstanceOfState.mainsnak.datavalue.value.id
 +
if parentInstanceOf and
 +
  (parentInstanceOf == 'Q310890' or parentInstanceOf == 'Q47487597') then --monotypic/fossil taxon
 +
parentMonoGenus = parentTaxon --confirmed
 +
break
 +
end
 +
end
 +
if parentMonoGenus and tfroms[parentMonoGenus] == nil then
 +
--housekeeping
 +
tfroms[parentMonoGenus] = 1
 +
ifroms = ifroms + 1
 +
fromTitleCount = fromTitleCount + 1
 +
--append monotypic genus & track
 +
parentArgs['from'..fromTitleCount] = parentMonoGenus
 +
categories[15] = '[[Category:Taxonbars with automatically added monotypic genera]]'
 +
break
 +
end
 +
end
 +
end
 +
end
 +
if parentMonoGenus == nil or tfroms[parentMonoGenus] == nil then
 +
categories[16] = '[[Category:Taxonbars of monotypic species missing genera]]'
 +
break
 +
end
 +
elseif taxonRank and taxonRank == 'Q34740' then --genus
 +
--is monotypic genus; add species
 +
--...
 +
end
 +
 +
end
 
end
 
end
 
end
 
end
−
--Create rows
+
−
local elements, title = {}, {}
+
--Setup navbox
−
if parentArgs['from'] == '' then parentArgs['from'] = nil end
+
local navboxParams = {
−
local item = mw.wikibase.getEntity(parentArgs['from'])
+
name  = 'Taxonbar',
−
if item then title = mw.title.new(item:getLabel()) else title = mw.title.getCurrentTitle() end
+
bodyclass = 'hlist',
−
if (not parentArgs['wikidata'] or parentArgs['wikidata'] == '') and (title.namespace == 0) then
+
listclass = '',
−
if parentArgs['from'] then parentArgs['wikidata'] = parentArgs['from'] elseif item then parentArgs['wikidata'] = item.id end
+
groupstyle = 'text-align: left;',
−
end
+
}
−
if title.namespace == 0 or stringArgs then --Only in the main namespace or if there are manual overrides
+
−
local sourcesFound = false
+
for f = 1,fromTitleCount,1
−
for _, params in pairs( conf.databases ) do
+
do
−
params[1] = mw.ustring.lower(params[1])
+
local elements, title = {}, nil
−
--Wikidata fallback if requested
+
--cleanup parameters
−
if (item ~= nil and item.claims ~= nil) and params[3] ~= 0 and (not parentArgs[params[1]] or parentArgs[params[1]] == '') then
+
if parentArgs['from'..f] == '' then parentArgs['from'..f] = nil end
−
local wikidataIds = getIdsFromWikidata( item, 'P' .. params[3] )
+
if parentArgs['title'..f] == '' then parentArgs['title'..f] = nil end
−
if wikidataIds[1] then
+
--remap aliases
−
parentArgs[params[1]] = wikidataIds[1]
+
for _, a in pairs( conf.aliases ) do
 +
local alias, name = mw.ustring.lower(a[1]), mw.ustring.lower(a[2])
 +
if parentArgs[alias..f] and not parentArgs[name..f] then
 +
parentArgs[name..f] = parentArgs[alias..f]
 +
parentArgs[alias..f] = nil
 +
end
 +
end
 +
--Fetch Wikidata item
 +
local from = resolve._entityid(frame, parentArgs['from'..f])
 +
local item = mw.wikibase.getEntity(from)
 +
local label = nil
 +
if type(item) == 'table' then
 +
local statements = item:getBestStatements('P225')[1] --taxon name
 +
if statements then
 +
local datavalue = statements.mainsnak.datavalue
 +
if datavalue then
 +
label = datavalue.value
 
end
 
end
 
end
 
end
−
local val = parentArgs[params[1]]
+
label = label or item:getLabel()
−
if val and val ~= '' and mw.ustring.lower(val) ~= 'no' and params[3] ~= 0 then
+
else
−
table.insert( elements, createRow( params[1], params[2] .. ':', val, getLink( params[3], val ), true ) )
+
if parentArgs['from'..f] then
−
if params[1] ~= 'wikidata' then sourcesFound = true end
+
categories[1] = ''
 +
categories[4] = '[[Category:Taxonbars with invalid from parameters]]'
 +
errors = errors .. mw.text.tag('strong', {class='error'}, 'Error: "' ..
 +
        parentArgs['from'..f] .. '" is not a valid Wikidata entity ID.<br />')
 
end
 
end
 +
end
 +
if label and label ~= '' then
 +
title = mw.title.new(label)
 +
end
 +
if not title and parentArgs['title'..f] then
 +
title = mw.title.new(parentArgs['title'..f])
 +
end
 +
if not title and f == 1 then
 +
title = currentTitle
 
end
 
end
 
 
 +
if title then
 +
if (not parentArgs['wikidata'..f] or parentArgs['wikidata'..f] == '') and
 +
  (title.namespace == 0) then
 +
if parentArgs['from'..f] then
 +
parentArgs['wikidata'..f] = parentArgs['from'..f]
 +
elseif item then
 +
parentArgs['wikidata'..f] = item.id
 +
end
 +
end
 +
if title.namespace == 0 or stringArgs then --Only in the main namespace or if there are manual overrides
 +
local sourcesFound = false
 +
local sourceCount = 0
 +
for _, params in pairs( conf.databases ) do
 +
params[1] = mw.ustring.lower(params[1])
 +
local propId = params[3]
 +
--Wikidata fallback if requested
 +
if (item ~= nil and item.claims ~= nil) and
 +
  (type(propId) == 'string' or (type(propId) == 'number' and propId > 0)) then
 +
local wikidataIds = getIdsFromWikidata( item, 'P' .. propId )
 +
local v = parentArgs[params[1]..f]
 +
if wikidataIds[1] then
 +
if (not v or v == '') then
 +
parentArgs[params[1]..f] = wikidataIds[1]
 +
else
 +
if v and v ~= 'no' and v ~= wikidataIds[1] then
 +
categories[9] = '[[Category:Taxonbars with manual taxon IDs differing from Wikidata]]'
 +
elseif v and v == wikidataIds[1] then
 +
categories[10] = '[[Category:Taxonbars with manual taxon IDs identical to Wikidata]]'
 +
end
 +
end
 +
end
 +
end
 +
local val = parentArgs[params[1]..f]
 +
if val and val ~= '' and mw.ustring.lower(val) ~= 'no' then
 +
if type(propId) == 'number' then
 +
if propId < 0 then propId = -propId end --allow link
 +
if propId > 0 then --link
 +
table.insert( elements, createRow( params[1], params[2]..':', val, getLink( propId, val ).text, true ) )
 +
else --propId == 0; no link
 +
table.insert( elements, createRow( params[1], params[2]..':', val, val, true ) )
 +
end
 +
else
 +
table.insert( elements, createRow( params[1], params[2]..':', val, getLink( propId, val ).text, true ) )
 +
end
 +
if params[1] ~= 'wikidata' then
 +
sourcesFound = true
 +
sourceCount = sourceCount + 1
 +
end
 +
end
 +
end
 +
 +
if sourceCount >= 20 then categories[12] = '[[Category:Taxonbars with 20+ taxon IDs]]' end
 +
if sourceCount >= 25 then categories[13] = '[[Category:Taxonbars with 25+ taxon IDs]]' end
 +
 +
--Generate navbox title
 +
if sourcesFound then
 +
rowCount = rowCount + 1
 +
if firstRow == 0 then firstRow = f end
 +
--set title from wikidata if it doesn't exist
 +
if parentArgs['title'..f] == '' or not parentArgs['title'..f] then
 +
parentArgs['noTitle'..f] = true
 +
parentArgs['title'..f] = title.text
 +
end
 +
--if it exists now, set row heading to title
 +
if parentArgs['title'..f] and parentArgs['title'..f] ~= '' then
 +
navboxParams['group'..f] = TaxonItalics.italicizeTaxonName(parentArgs['title'..f], false)
 +
else
 +
navboxParams['group'..f] = ""
 +
end
 +
navboxParams['list'..f] = table.concat( elements )
 +
elseif currentEntityId then
 +
categories[7] = '[[Category:Taxonbar pages without Wikidata taxon IDs]]'
 +
end
 +
 +
--Categorize
 +
if parentArgs['from'..f] and parentArgs['from'..f] ~= '' then
 +
--blank "missing from" if 'from' exists
 +
categories[1] = ''
 +
--blank "desynced" if 'from' matches current page
 +
if parentArgs['from'..f] == currentEntityId then categories[2] = '' end
 +
end
 +
--cannot be "desynced" if no 'from' params
 +
if categories[1] ~= '' then categories[2] = '' end
 +
end
 +
end
 +
end
 +
 +
if rowCount > 0 then
 
local Navbox = require('Module:Navbox')
 
local Navbox = require('Module:Navbox')
−
+
if rowCount > 1 then
−
if sourcesFound then
+
--remove duplicates and move page title to top
−
return Navbox._navbox( {
+
local rowIDs = {}
−
name  = 'Taxonbar',
+
for f = 1,fromTitleCount,1
−
bodyclass = 'hlist',
+
do
−
listclass = '',
+
if parentArgs['title'..f] and parentArgs['title'..f] ~= '' then
−
group1 = '[[Help:Taxon identifiers|Taxon identifiers]]', --.. elementscats,
+
if rowIDs[parentArgs['wikidata'..f]] then --remove duplicate
−
list1 = table.concat( elements )
+
navboxParams['group'..f] = nil
−
} )
+
navboxParams['list'..f] = nil
 +
else
 +
rowIDs[parentArgs['wikidata'..f]] = true
 +
if f > firstRow and (parentArgs['title'..f] == currentTitle.text or
 +
  parentArgs['wikidata'..f] == currentEntityId) then --move item linked to page to top
 +
if navboxParams['group'..f] and
 +
  navboxParams['group'..f] ~= '' and
 +
  navboxParams['list'..f] and
 +
  navboxParams['list'..f] ~= '' then
 +
local tempGroup, tempList = navboxParams['group'..f], navboxParams['list'..f]
 +
navboxParams['group'..f], navboxParams['list'..f] = navboxParams['group'..firstRow], navboxParams['list'..firstRow]
 +
navboxParams['group'..firstRow], navboxParams['list'..firstRow] = tempGroup, tempList
 +
end
 +
end
 +
end
 +
end
 +
end
 +
--adjust navbox for number of rows
 +
navboxParams['title'] = "[[Help:Taxon identifiers|Taxon identifiers]]"
 +
if rowCount > 2 then
 +
navboxParams['navbar'] = 'plain'
 +
else
 +
navboxParams['state'] = 'off'
 +
navboxParams['navbar'] = 'off'
 +
end
 +
elseif parentArgs['noTitle'..firstRow] then
 +
navboxParams['group'..firstRow] = '[[Help:Taxon identifiers|Taxon identifiers]]'
 
else
 
else
−
return ""
+
navboxParams['group'..firstRow] = '[[Help:Taxon identifiers|Taxon identifiers]]<br />' .. navboxParams['group'..firstRow]
 
end
 
end
 +
 +
--return navbox
 +
outString = Navbox._navbox(navboxParams)
 +
end
 +
 +
--add categories
 +
if string.sub(currentTitle.subpageText,1,9) == 'testcases' then parentArgs['demo'] = true end
 +
if parentArgs['demo'] and parentArgs['demo'] ~= '' then
 +
outString = outString .. mw.text.nowiki(table.concat(categories)) .. '<br />'
 +
elseif currentTitle.namespace == 0 then
 +
outString = outString .. table.concat(categories)
 
end
 
end
 +
 +
return outString .. errors
 
end
 
end
  
 
return p
 
return p

Revision as of 01:17, 5 May 2018

require('Module:No globals')

local conf = require( "Module:Taxonbar/conf" ) -- configuration module local TaxonItalics = require("Module:TaxonItalics") -- use a function from Module:TaxonItalics to italicize a taxon name

local function getIdsFromWikidata( item, property ) local ids = {} if not item.claims[property] then return ids end for _, statement in pairs( item.claims[property] ) do if statement.mainsnak.datavalue then table.insert( ids, statement.mainsnak.datavalue.value ) end end return ids end

local function getLink( property, val ) local link, returnVal = "", {}

returnVal.isError = false

if mw.ustring.find( val, '//' ) then link = val else if type(property) == 'number' and property > 0 then local entityObject = mw.wikibase.getEntity('P'..property) local dataType

if entityObject then dataType = entityObject.datatype else returnVal.isError = true end

if dataType == "external-id" then local formatterURL = entityObject:getBestStatements('P1630')[1] if formatterURL then link = formatterURL.mainsnak.datavalue.value end elseif dataType == "url" then local subjectItem = entityObject:getBestStatements('P1629')[1] if subjectItem then local officialWebsite = mw.wikibase.getEntity(subjectItem.mainsnak.datavalue.value.id):getBestStatements('P856')[1] if officialWebsite then link = officialWebsite.mainsnak.datavalue.value end end elseif dataType == "string" then local formatterURL = entityObject:getBestStatements('P1630')[1] if formatterURL then link = formatterURL.mainsnak.datavalue.value else local subjectItem = entityObject:getBestStatements('P1629')[1] if subjectItem then local officialWebsite = mw.wikibase.getEntity(subjectItem.mainsnak.datavalue.value.id):getBestStatements('P856')[1] if officialWebsite then link = officialWebsite.mainsnak.datavalue.value end end end else returnVal.isError = true end elseif type(property) == 'string' then link = property end

local valurl = val if mw.ustring.find( link, 'antweb.org' ) then valurl = mw.ustring.gsub(valurl, " ", "%%20") end valurl = mw.ustring.gsub(valurl,"%%","%%%%") link = mw.ustring.gsub(link, '$1', valurl) end

link = mw.ustring.gsub(link, '^[Hh][Tt][Tt][Pp]([Ss]?)://', 'http%1://') -- fix wikidata URL val = mw.ustring.match(val, '([^=/]*)/?$') -- get display name from end of URL if mw.ustring.find( link, '//' ) then returnVal.text = '['..link..' '..mw.text.encode(mw.uri.decode(val, "PATH"),'%[%]')..']' elseif link == "" then returnVal.text = val else returnVal.text = ''..val..'' end return returnVal end

local function createRow( id, label, rawValue, link, withUid ) if link then local outStr = '*' .. label .. ' <span' if withUid then outStr = outStr..' class="uid"' end return outStr..'>' .. link .. '\n' else return '* ' .. mw.text.tag('span', {class='error'}, 'The identifier ' .. id .. ' ' .. rawValue .. ' is not valid.') .. '\n' end end

local function copyTable(inTable) if type(inTable) ~= 'table' then return inTable end local outTable = setmetatable({}, getmetatable(inTable)) for key, value in pairs (inTable) do outTable[copyTable(key)] = copyTable(value) end return outTable end

local p = {}

function p.authorityControlTaxon( frame ) local resolve = require( "Module:ResolveEntityId" ) local parentArgs = copyTable(frame:getParent().args) local currentTitle = mw.title.getCurrentTitle() local currentEntityId = mw.wikibase.getEntityIdForCurrentPage()

local stringArgs = false local fromTitleCount, firstRow, rowCount = 1, 0, 0 local outString, errors = "", "" local tfroms = {} --non-sequential table of unique froms local ifroms = 0 --integer size of tfroms, b/c Lua local categories = { , , , -- [3] placeholder for , -- [4] placeholder for , -- [5] placeholder for , -- [6] placeholder for , -- [7] placeholder for , -- [8] placeholder for , -- [9] placeholder for , --[10] placeholder for , --[11] placeholder for , --[12] placeholder for , --[13] placeholder for , --[14] placeholder for , --[15] placeholder for , --[16] placeholder for }

--Assess the page's relationship with Wikidata local currentItem = nil if currentTitle.namespace == 10 then --i.e. Module:Taxonbar/sandbox, Template:Taxonbar/doc, etc. if resolve._entityid(frame, parentArgs['from']) then currentItem = mw.wikibase.getEntity(parentArgs['from']) end if currentItem == nil then if resolve._entityid(frame, parentArgs['from1']) then currentItem = mw.wikibase.getEntity(parentArgs['from1']) end end elseif resolve._entityid(frame, currentEntityId) then currentItem = mw.wikibase.getEntity(currentEntityId) else --currentEntityId == nil categories[6] = end if currentItem then local acceptable = { ['Q16521'] = 'taxon', ['Q310890'] = 'monotypic taxon', ['Q2568288'] = 'ichnotaxon', ['Q23038290'] = 'fossil taxon', ['Q47487597'] = 'monotypic fossil taxon', ['Q42621'] = 'hybrid', ['Q235536'] = 'incertae sedis', ['Q713623'] = 'clade', ['Q848328'] = 'serotype', ['Q17487588'] = 'unavailable combination', } categories[11] = --unset if acceptable found for _, instanceOfState in pairs ( currentItem:getBestStatements('P31') ) do --instance of local instanceOf = instanceOfState.mainsnak.datavalue.value.id if acceptable[instanceOf] then categories[11] = break end end end

--Cleanup args for k, v in pairs( frame:getParent().args ) do if type(k) == 'string' then --make args case insensitive local lowerk = mw.ustring.lower(k) if not parentArgs[lowerk] or parentArgs[lowerk] == then parentArgs[k] = nil parentArgs[lowerk] = v end --remap abc to abc1 if not mw.ustring.find(lowerk,"%d$") then --if no number at end of param if not parentArgs[lowerk..'1'] or parentArgs[lowerk..'1'] == then parentArgs[lowerk] = nil lowerk = lowerk..'1' parentArgs[lowerk] = v end end if v and v ~= then --remap "for" to "title" if mw.ustring.sub(lowerk,1,3) == "for" then local forTitle = mw.ustring.gsub(lowerk,"^for","title",1) if parentArgs[forTitle] == or not parentArgs[forTitle] then parentArgs[lowerk] = nil lowerk = forTitle parentArgs[lowerk] = v end end --find highest from or title param if mw.ustring.sub(lowerk,1,4) == "from" then local fromNumber = tonumber(mw.ustring.sub(lowerk,5,-1)) if fromNumber and fromNumber >= fromTitleCount then fromTitleCount = fromNumber end --look for duplicate froms while we're here if mw.ustring.find(v, "^Q%d") then if tfroms[v] then categories[8] = tfroms[v] = tfroms[v] + 1 else tfroms[v] = 1 ifroms = ifroms + 1 end if ifroms > 1 then categories[3] = end end elseif mw.ustring.sub(lowerk,1,5) == "title" then local titleNumber = tonumber(mw.ustring.sub(lowerk,4,-1)) if titleNumber and titleNumber >= fromTitleCount then fromTitleCount = titleNumber end elseif mw.ustring.lower(v) ~= 'no' then stringArgs = true categories[5] = end end end end

--Append basionym to arg list, if not already provided if currentItem then local currentBasState = currentItem:getBestStatements('P566')[1] --basionym if currentBasState then local basionymId = currentBasState.mainsnak.datavalue.value.id if basionymId and resolve._entityid(frame, basionymId) and tfroms[basionymId] == nil then --check that basionym is a strict instance of taxon local basionymItem = mw.wikibase.getEntity(basionymId) if basionymItem then local acceptable = { ['Q16521'] = 'taxon', ['Q310890'] = 'monotypic taxon', ['Q2568288'] = 'ichnotaxon', ['Q23038290'] = 'fossil taxon', ['Q47487597'] = 'monotypic fossil taxon', } for _, instanceOfState in pairs ( basionymItem:getBestStatements('P31') ) do --instance of local instanceOf = instanceOfState.mainsnak.datavalue.value.id if acceptable[instanceOf] then --housekeeping tfroms[basionymId] = 1 ifroms = ifroms + 1 fromTitleCount = fromTitleCount + 1 --append basionym & track parentArgs['from'..fromTitleCount] = basionymId categories[14] = break end end end end end end

--Append monotypic genus/species to arg list of monotypic species/genus, if not already provided if currentItem then for _, instanceOfState in pairs ( currentItem:getBestStatements('P31') ) do --instance of local taxonRank = nil local parentItem = nil local parentTaxon = nil local parentTaxonRank = nil local parentMonoGenus = nil --holy grail/tbd local instanceOf = instanceOfState.mainsnak.datavalue.value.id if instanceOf and (instanceOf == 'Q310890' or instanceOf == 'Q47487597') then --monotypic/fossil taxon local taxonRankState = currentItem:getBestStatements('P105')[1] --taxon rank if taxonRankState then taxonRank = taxonRankState.mainsnak.datavalue.value.id end

if taxonRank and taxonRank == 'Q7432' then --species --is monotypic species; add genus local parentTaxonState = currentItem:getBestStatements('P171')[1] --parent taxon if parentTaxonState then parentTaxon = parentTaxonState.mainsnak.datavalue.value.id end --confirm parent taxon rank == genus & monotypic (too careful/expensive? remove/mod this first if hitting any request limits) if parentTaxon and resolve._entityid(frame, parentTaxon) then parentItem = mw.wikibase.getEntity(parentTaxon) if parentItem then local parentTaxonRankState = parentItem:getBestStatements('P105')[1] --taxon rank if parentTaxonRankState then parentTaxonRank = parentTaxonRankState.mainsnak.datavalue.value.id end if parentTaxonRank and parentTaxonRank == 'Q34740' then -- genus for _, parentInstanceOfState in pairs ( parentItem:getBestStatements('P31') ) do --instance of local parentInstanceOf = parentInstanceOfState.mainsnak.datavalue.value.id if parentInstanceOf and (parentInstanceOf == 'Q310890' or parentInstanceOf == 'Q47487597') then --monotypic/fossil taxon parentMonoGenus = parentTaxon --confirmed break end end if parentMonoGenus and tfroms[parentMonoGenus] == nil then --housekeeping tfroms[parentMonoGenus] = 1 ifroms = ifroms + 1 fromTitleCount = fromTitleCount + 1 --append monotypic genus & track parentArgs['from'..fromTitleCount] = parentMonoGenus categories[15] = break end end end end if parentMonoGenus == nil or tfroms[parentMonoGenus] == nil then categories[16] = break end elseif taxonRank and taxonRank == 'Q34740' then --genus --is monotypic genus; add species --... end

end end end

--Setup navbox local navboxParams = { name = 'Taxonbar', bodyclass = 'hlist', listclass = , groupstyle = 'text-align: left;', }

for f = 1,fromTitleCount,1 do local elements, title = {}, nil --cleanup parameters if parentArgs['from'..f] == then parentArgs['from'..f] = nil end if parentArgs['title'..f] == then parentArgs['title'..f] = nil end --remap aliases for _, a in pairs( conf.aliases ) do local alias, name = mw.ustring.lower(a[1]), mw.ustring.lower(a[2]) if parentArgs[alias..f] and not parentArgs[name..f] then parentArgs[name..f] = parentArgs[alias..f] parentArgs[alias..f] = nil end end --Fetch Wikidata item local from = resolve._entityid(frame, parentArgs['from'..f]) local item = mw.wikibase.getEntity(from) local label = nil if type(item) == 'table' then local statements = item:getBestStatements('P225')[1] --taxon name if statements then local datavalue = statements.mainsnak.datavalue if datavalue then label = datavalue.value end end label = label or item:getLabel() else if parentArgs['from'..f] then categories[1] = categories[4] = errors = errors .. mw.text.tag('strong', {class='error'}, 'Error: "' .. parentArgs['from'..f] .. '" is not a valid Wikidata entity ID.
') end end if label and label ~= then title = mw.title.new(label) end if not title and parentArgs['title'..f] then title = mw.title.new(parentArgs['title'..f]) end if not title and f == 1 then title = currentTitle end

if title then if (not parentArgs['wikidata'..f] or parentArgs['wikidata'..f] == ) and (title.namespace == 0) then if parentArgs['from'..f] then parentArgs['wikidata'..f] = parentArgs['from'..f] elseif item then parentArgs['wikidata'..f] = item.id end end if title.namespace == 0 or stringArgs then --Only in the main namespace or if there are manual overrides local sourcesFound = false local sourceCount = 0 for _, params in pairs( conf.databases ) do params[1] = mw.ustring.lower(params[1]) local propId = params[3] --Wikidata fallback if requested if (item ~= nil and item.claims ~= nil) and (type(propId) == 'string' or (type(propId) == 'number' and propId > 0)) then local wikidataIds = getIdsFromWikidata( item, 'P' .. propId ) local v = parentArgs[params[1]..f] if wikidataIds[1] then if (not v or v == ) then parentArgs[params[1]..f] = wikidataIds[1] else if v and v ~= 'no' and v ~= wikidataIds[1] then categories[9] = elseif v and v == wikidataIds[1] then categories[10] = end end end end local val = parentArgs[params[1]..f] if val and val ~= and mw.ustring.lower(val) ~= 'no' then if type(propId) == 'number' then if propId < 0 then propId = -propId end --allow link if propId > 0 then --link table.insert( elements, createRow( params[1], params[2]..':', val, getLink( propId, val ).text, true ) ) else --propId == 0; no link table.insert( elements, createRow( params[1], params[2]..':', val, val, true ) ) end else table.insert( elements, createRow( params[1], params[2]..':', val, getLink( propId, val ).text, true ) ) end if params[1] ~= 'wikidata' then sourcesFound = true sourceCount = sourceCount + 1 end end end

if sourceCount >= 20 then categories[12] = end if sourceCount >= 25 then categories[13] = end

--Generate navbox title if sourcesFound then rowCount = rowCount + 1 if firstRow == 0 then firstRow = f end --set title from wikidata if it doesn't exist if parentArgs['title'..f] == or not parentArgs['title'..f] then parentArgs['noTitle'..f] = true parentArgs['title'..f] = title.text end --if it exists now, set row heading to title if parentArgs['title'..f] and parentArgs['title'..f] ~= then navboxParams['group'..f] = TaxonItalics.italicizeTaxonName(parentArgs['title'..f], false) else navboxParams['group'..f] = "" end navboxParams['list'..f] = table.concat( elements ) elseif currentEntityId then categories[7] = end

--Categorize if parentArgs['from'..f] and parentArgs['from'..f] ~= then --blank "missing from" if 'from' exists categories[1] = --blank "desynced" if 'from' matches current page if parentArgs['from'..f] == currentEntityId then categories[2] = end end --cannot be "desynced" if no 'from' params if categories[1] ~= then categories[2] = end end end end

if rowCount > 0 then local Navbox = require('Module:Navbox') if rowCount > 1 then --remove duplicates and move page title to top local rowIDs = {} for f = 1,fromTitleCount,1 do if parentArgs['title'..f] and parentArgs['title'..f] ~= then if rowIDs[parentArgs['wikidata'..f]] then --remove duplicate navboxParams['group'..f] = nil navboxParams['list'..f] = nil else rowIDs[parentArgs['wikidata'..f]] = true if f > firstRow and (parentArgs['title'..f] == currentTitle.text or parentArgs['wikidata'..f] == currentEntityId) then --move item linked to page to top if navboxParams['group'..f] and navboxParams['group'..f] ~= and navboxParams['list'..f] and navboxParams['list'..f] ~= then local tempGroup, tempList = navboxParams['group'..f], navboxParams['list'..f] navboxParams['group'..f], navboxParams['list'..f] = navboxParams['group'..firstRow], navboxParams['list'..firstRow] navboxParams['group'..firstRow], navboxParams['list'..firstRow] = tempGroup, tempList end end end end end --adjust navbox for number of rows navboxParams['title'] = "Taxon identifiers" if rowCount > 2 then navboxParams['navbar'] = 'plain' else navboxParams['state'] = 'off' navboxParams['navbar'] = 'off' end elseif parentArgs['noTitle'..firstRow] then navboxParams['group'..firstRow] = 'Taxon identifiers' else navboxParams['group'..firstRow] = 'Taxon identifiers
' .. navboxParams['group'..firstRow] end

--return navbox outString = Navbox._navbox(navboxParams) end

--add categories if string.sub(currentTitle.subpageText,1,9) == 'testcases' then parentArgs['demo'] = true end if parentArgs['demo'] and parentArgs['demo'] ~= then outString = outString .. mw.text.nowiki(table.concat(categories)) .. '
' elseif currentTitle.namespace == 0 then outString = outString .. table.concat(categories) end

return outString .. errors end

return p

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